Centre for Biodiversity Genomics - Biodiversity Institute of Ontario

University of Guelph, Guelph, Ontario
What the facility does

Species identification and biodiversity science

Area(s) of Expertise

The Centre for Biodiversity Genomics (CBG) is a place of excellence in biodiversity research. The building hosts a dynamic mash-up of creative minds from three distinct disciplines – taxonomy, genetics & computer science – which combine to create the first ever “Big Data” pipeline that is capable of capturing the full breadth of ecosystem diversity. Part of the ongoing research at CBG is focused on mobilizing applications of DNA barcoding to address the socio-economic problems Canada and the rest of the world face. We do this by partnering with government and industry on a variety of projects, including:

  1. working with mineral extraction companies, such as New Gold Inc., to develop the next generation of environmental restoration tools for the Canadian mining sector;
  2. helping the Bird Strike Association of Canada to identify species of birds and bats which are colliding with civil and military aircraft; and
  3. assisting the United States Food & Drug Administration in developing a DNA-based tool for identifying ingredient substitutions in food products.

To see a full list of the possibilities, please visit our website: www.biodiversitygenomics.net/

Research Services

Species identification services, including: bird/wildlife involved in aircraft collisions, ingredient authentication in foods, DNA-based environmental impact assessments, detection of invasive pests and illegally traded plants & wildlife, dietary analyses (metabarcoding).

Sectors of Application
  • Agriculture, animal science and food
  • Education
  • Environmental technologies and related services
  • Fisheries and aquaculture
  • Forestry and forest-based industries
  • Health care and social services
  • Information and communication technologies and media
  • Life sciences, pharmaceuticals and medical equipment
  • Mining, minerals and metals
  • Ocean industries
  • Policy and governance

Name of specialized lab

Name of equipment

Description of function

Genetics Laboratory (CCDB)

Beckman FXP & NXP liquid handling robots

 

 

ABI 3730XL DNA analyzers

Capillary DNA sequencing

 

Eppendorf thermocyclers

 

 

DNA bank (2 million specimen capacity)

Secure -80C freezer suite with backup generator

 

Roche LightCycler® 96

Real-Time PCR

 

Applied Biosystems StepOnePlus™

Real-Time PCR

 

ThermoFisher Scientific Ion Torrent PGM

Next Generation Sequencing (NGS)

 

Life Technologies Ion Torrent OneTouch ES

Emulsion system for NGS

 

Life Technologies Ion Torrent S5

Next Generation Sequencing (NGS)

 

Life Technologies Ion Torrent S5 chef

Liquid handling and sample preparation system for S5

 

Pacific Biosystems (PACBIO®) Sequel System

Next Generation Long Amplicon Sequencing

Collections Laboratory

Specimen bank (5 million specimen capacity)

 

 

3D imaging systems

 

 

Photo montage digital imaging systems

 

 

Leica Microsystems Critical Point Dryer

 

 

Ultrasensitive balance

 

 

Mobile specimen collection laboratory

 

Informatics Laboratory

756 CPU cores (IBM, SGI) and 218 terabytes of storage (IBM DS4700/DCS9900, Isilon X200)

High Performance Computing (HPC) cluster for data-intensive research

Access to Compute Canada’s HPC resources

  • U.S. Food and Drug Administration
  • New Gold Inc.
  • Bird Strike Association of Canada
  • Environment and Climate Change Canada
  • Agriculture and Agri Food Canada
  • Parks Canada
  • Human Food Project
  • Canadian Food Inspection Agency

Title

URL

Scientists: Food testing can be Fast. CNN

http://www.cnn.com/video/#/video/world/2013/02/26/pkg-newton-canada-food-testing.cnn

Do You Know Where Your Food Came From? Globe and Mail

http://www.theglobeandmail.com/life/food-and-wine/food-trends/do-you-know-where-your-food-came-from-its-all-in-the-genes/article595866/

CTV – Endangered Shark Fins

http://bc.ctvnews.ca/endangered-shark-fins-sold-in-vancouver-probe-1,1066345

Tests Reveal Mislabeling of Fish. New York Times

http://www.nytimes.com/2011/05/27/science/earth/27fish.html?_r=3&scp=1&sq=Paul%20Hebert&st=cse&

Nature - DNA barcodes for plants a step closer

http://www.nature.com/news/2009/090727/full/news.2009,733.html

CBC - Shark fins sold for soup in Canada include many at-risk species

http://www.cbc.ca/news/technology/shark-fins-1.4262628

GNC, Target, Wal-Mart, Walgreens accused of selling adulterated ‘herbals’

http://www.washingtonpost.com/news/morning-mix/wp/2015/02/03/gnc-target-...